| Relevance of Course Objectives and Core Learning Outcomes(%) |
Teaching and Assessment Methods for Course Objectives |
| Course Objectives |
Competency Indicators |
Ratio(%) |
Teaching Methods |
Assessment Methods |
| Understand the differences among different bioinformation tools and how to select the right one to fit your task |
|
|
| topic Discussion/Production |
| Exercises |
| Discussion |
|
| Attendance |
| Oral Presentation |
| Assignment |
|
| Course Content and Homework/Schedule/Tests Schedule |
| Week |
Course Content |
| Week 1 |
Introduction |
| Week 2 |
The gene to genome |
| Week 3 |
The history of sequencing |
| Week 4 |
Plant genomic Databases |
| Week 5 |
Sequence alignment and primer design |
| Week 6 |
R program introduction |
| Week 7 |
DNA-seq analysis and application |
| Week 8 |
Expression analysis |
| Week 9 |
Mid-term |
| Week 10 |
Co-expression tools |
| Week 11 |
Network exploration |
| Week 12 |
Promoter analysis |
| Week 13 |
Exploring your gene of interest with online database |
| Week 14 |
Functional classification and pathway visualization |
| Week 15 |
Group report I |
| Week 16 |
Group report II
Visit the company (Genomics)
Final exam |
self-directed
learning |
|
|
| Evaluation |
1. Midterm report (40%)
2. Final oral present (40%)
3. Homework (20%)
|
| Textbook & other References |
1. Plant Bioinformatics methods and protocols (Edwards, David. 2016).
2. R Bioinformatics Cookbook (Dan MacLean, 2019)
|
| Teaching Aids & Teacher's Website |
|
| Office Hours |
|
| Sustainable Development Goals, SDGs(Link URL) |
| | include experience courses：N |
|