NCHU Course Outline
Course Name (中) 基因體與蛋白質體學(4125)
(Eng.) Genomics and Proteomics
Offering Dept Department of Animal Science
Course Type Elective Credits 2 Teacher HUANG, SAN-YUAN
Department Department of Animal Science / Undergraduate Language Chinese Semester 2026-FALL
Course Description (中)本課程將包括 1. 基因體學定義及其應用; 2. 基因體學的基本技術; 3. 基因定位與基因體定序的基本技術; 4. 基因體定序、組合與註解; 5. 功能性基因體學; 6. 高通量遺傳分析; 7. 結構基因體學; 8. 比較基因體學; 9. 基因體學與農業; 10.基因體學的倫理議題; 11.蛋白質體學簡介; 12.蛋白質的二維電泳分析; 13. 質譜術應用於蛋白質體學; 14.以胜肽指紋分析鑑定蛋白質身份及蛋白質定序技術; 15. 基因體與蛋白質體料庫簡介; 16. 磷酸化蛋白質體與醣蛋白質體.
(Eng.)The course will include 1. What is genomics, and what are its applications?; 2. Technical foundations of Genomics; 3. fundamentals of mapping and sequencing; 4. Genome sequencing, assembly and annotation; 5. Functional genomics; 6. High-throughput genetics; 7 Structural genomics.; 8. Comparative genomics; 9. Genomics and agriculture; 10. Ethical issues of genomics; 11. Introduction to proteomics; 12. Two-dimensional gel electrophoresis of proteins; 13. Mass spectrometry for proteomics 14. Protein Identification by peptide mass fingerprinting and protein sequencing techniques; 15. Genomic and proteomic databases; 16. Phosphoproteomics and glycoproteomics.
Prerequisites
Relevance of Course Objectives and Core Learning Outcomes(%) Teaching and Assessment Methods for Course Objectives
Course Objectives Competency Indicators Ratio(%) Teaching Methods Assessment Methods
建立學生對基因體與蛋白質體學之基本概念，做為學生未來進行相關研究之基礎
Enable the students gain basic understandings in genomics and proteomics as bases for related researches in the future.
1.Animal Genetics and Breeding
2.Animal reproduction and physiology knowledge
3.Animal nutrition, feed and business management knowledge
4.Animal product processing, utilization and safety knowledge
5.Mathematical statistics
6.Caring, respecting life and animal welfare
7.Communication and problem solving skills
30
30
0
0
20
10
10
Lecturing
Discussion
Quiz
Oral Presentation
Attendance
Course Content and Homework/Schedule/Tests Schedule
Week Course Content
Week 1 Course introduction
Week 2 Chap. 1 What is genomics, and what are its applications?
Week 3 Chap. 2 Technical foundations of genomics
Week 4 Chap. 3 Fundamentals of mapping and sequencing
Week 5 Chap. 4 Genome sequencing, assembly and annotation
Week 6 Chap. 5 Functional genomics
Week 7 Chap. 6 High-throughput genetics
Week 8 Chap. 7 Structural genomics
Week 9 Mid-term exam.
Week 10 Chap. 8 Comparative genomics
Week 11 Chap. 9 Genomics and agriculture
Week 12 Chap. 10 Ethical issues of genomics
Week 13 Chap. 11 Introduction to proteomics
Chap. 12 Two-dimensional gel electrophoresis of proteins
Week 14 Chap. 13 Mass spectrometry for proteomics
Chap. 14 Phosphoproteomics and glycoproteomics
Week 15 Chap. 15 Genomic and proteomic databases
Chap. 16 Use of multidimensional separation protocols for the purification of trace
components in complex biological samples for proteomics analysis
Week 16 Oral presentation
self-directed
learning		    01.Participation in professional forums, lectures, and corporate sharing sessions related to industry-government-academia-research exchange activities.
   02.Viewing multimedia materials related to industry and academia.
Evaluation
出席情況(20%)、期中考(40%)、期末口頭報告(40%)。
Attendance (20%), Mid-term exam. (40%), Oral presentation (40%).
Textbook & other References
教科書
1. Benfey, P. and Protopapas A. D. 2005. Essentials of Genomics. Benjamin Cummings, USA.
2. Saraswathy, N. and P. Ramalingam, 2012. Concepts and techniques in genomics and proteomics. Woodhead Publishing Limited, Cambridge, UK.
參考書目
1. Campbellm, A. M. and L. J. Heyer, 2007. Discovering Genomics, Proteomics and Bioinformatics, 2nd Edition. Benjamin Cummings, USA.
2. Baxevanis, A. D. and B. F. F. Ouellette (ed.) 2005. Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins. 3rd Ed. Published by: John Wiley & Son, Inc., Hoboken, NJ, U.S.A.
3. Batiza, A. F., 2005. Bioinformatics, Genomics, And Proteomics: Getting the Big Picture. Chelsea House Publications.
5. Papers in related journals
課程教材（教師個人網址請列在本校內之網址）
(teaching aids & teacher's website)
Teaching Aids & Teacher's Website
iLearning
Office Hours
星期二上午10:00-12:00
星期四上午08:00-10:00
Please respect the intellectual property rights and use the materials and protected electronic files legally. Please respect gender equality.
Update Date, year/month/day：None Printed Date, year/month/day：2026 / 8 / 26
The second-hand book website：http://www.myub.com.tw/